cell2fate
latest
  • Installation

Quick start tutorial:

  • Cell2Fate analysis of mouse pancreas development dataset
  • Assessing confidence in cell2fate predictions

Cell2Fate + Cell2Location:

  • Running cell2fate and saving modules in human developing brain dataset
  • Running cell2location with the saved modules from the human developing brain dataset

Reproduce publication figures:

  • Cell2Fate analysis of mouse bone marrow dataset
  • Cell2Fate dynamical model analysis of PBMC dataset
  • Cell2Fate analysis of human bone marrow dataset
  • Cell2Fate analysis of mouse erythroid dataset
  • Cell2Fate analysis of mouse dentate gyrus dataset

API:

  • Prepare data
  • Cell2Fate: RNA velocity (scvi-tools/pyro)
  • Plotting
  • General utils
  • Pyro and scvi-tools infrastructure classes
cell2fate
  • Overview: module code

All modules for which code is available

  • cell2fate.AutoAmortisedNormalMessenger
  • cell2fate._cell2fate_DynamicalModel
  • cell2fate._cell2fate_DynamicalModel_module
  • cell2fate._pyro_base_cell2fate_module
  • cell2fate._pyro_mixin

© Copyright 2024, Alexander Aivazidis, Vitalii Kleshchevnikov, Bayraktar Lab. Revision 7fc6eea5.

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